Towards the specification and verification of modal properties for structured systems

System specification formalisms should come with suitable property specification languages and effective verification tools. We sketch a framework for the verification of quantified temporal properties of systems with dynamically evolving structure. We consider visual specification formalisms like graph transformation systems (GTS) where program states are modelled as graphs, and the program behavior is specified by graph transformation rules. The state space of a GTS can be represented as a graph transition system (GTrS), i.e. a transition system with states and transitions labelled, respectively, with a graph, and with a partial morphism representing the evolution of state components. Unfortunately, GTrSs are prohibitively large or infinite even for simple systems, making verification intractable and hence calling for appropriate abstraction techniques

Minimisation of event structures

Event structures are fundamental models in concurrency theory, providing a representation of events in computation and of their relations, notably concurrency, conflict and causality. In this paper we present a theory of minimisation for event structures. Working in a class of event structures that generalises many stable event structure models in the literature, (e.g., prime, asymmetric, flow and bundle event structures) we study a notion of behaviour-preserving quotient, taking hereditary history preserving bisimilarity as a reference behavioural equivalence. We show that for any event structure a uniquely determined minimal quotient always exists. We observe that each event structure can be seen as the quotient of a prime event structure, and that quotients of general event structures arise from quotients of (suitably defined) corresponding prime event structures. This gives a special relevance to quotients in the class of prime event structures, which are then studied in detail, providing a characterisation and showing that also prime event structures always admit a unique minimal quotient

Unfolding-based Diagnosis of Systems with an Evolving Topology

We propose a framework for model-based diagnosis of systems with mobility and variable topologies, modelled as graph transformation systems. Generally speaking, model-based diagnosis is aimed at constructing explanations of observed faulty behaviours on the basis of a given model of the system. Since the number of possible explanations may be huge, we exploit the unfolding as a compact data structure to store them, along the lines of previous work dealing with Petri net models. Given a model of a system and an observation, the explanations can be constructed by unfolding the model constrained by the observation, and then removing incomplete explanations in a pruning phase. The theory is formalised in a general categorical setting: constraining the system by the observation corresponds to taking a product in the chosen category of graph grammars, so that the correctness of the procedure can be proved by using the fact that the unfolding is a right adjoint and thus it preserves products. The theory should hence be easily applicable to a wide class of system models, including graph grammars and Petri nets

Impact of phenylpropanoid compounds on heat stress tolerance in carrot cell cultures

The phenylpropanoid and flavonoid families include thousands of specialized metabolites that influence a wide range of processes in plants, including seed dispersal, auxin transport, photoprotection, mechanical support and protection against insect herbivory. Such metabolites play a key role in the protection of plants against abiotic stress, in many cases through their well-known ability to inhibit the formation of reactive oxygen species (ROS). However, the precise role of specific phenylpropanoid and flavonoid molecules is unclear. We therefore investigated the role of specific anthocyanins (ACs) and other phenylpropanoids that accumulate in carrot cells cultivated in vitro, focusing on their supposed ability to protect cells from heat stress. First we characterized the effects of heat stress to identify quantifiable morphological traits as markers of heat stress susceptibility. We then fed the cultures with precursors to induce the targeted accumulation of specific compounds, and compared the impact of heat stress in these cultures and unfed controls. Data modeling based on Projection to Latent Structures (PLS) regression revealed that metabolites containing coumaric or caffeic acid, including ACs, correlate with less heat damage. Further experiments suggested that one of the cellular targets damaged by heat stress and protected by these metabolites is the actin microfilament cytoskeleton

Canonical Derivations with Negative Application Conditions

Using graph transformations to specify the dynamics of distributed systems and networks, we require a precise understanding of concurrency. Negative application conditions (NACs) are an essential means for controlling the application of rules, extending our ability to model complex systems. A classical notion of concurrency in graph transformation is based on shift equivalence and its representation by canonical derivations, i.e., normal forms of the shift operation anticipating independent steps. These concepts are lifted to graph transformation systems with NACs and it is shown that canonical derivations exist for so-called incremental NACs

Encoding Synchronous Interactions Using Labelled Petri Nets

International audienceWe present an encoding of (bound) CSP processes with replication into Petri nets with labelled transitions. Through the encoding, the firing semantics of Petri nets models the standard operational semantics of CSP processes, which is both preserved and reflected. This correspondence allows for describing by net semantics the standard CSP observational equivalences. Since the encoding is modular with respect to process syntax, the paper puts on a firm ground the technology transfer between the two formalisms, e.g. recasting into the CSP framework well-established results like decidability of coverability for nets. This work complements previous results concerning the encoding of asynchronous interactions, thus witnessing the expressiveness of (open) labelled nets in modelling process calculi with alternative communication patterns

Representing Dependencies in Event Structures

Event structures where the causality may explicitly change during a computation have recently gained the stage. In this kind of event structures the changes in the set of the causes of an event are triggered by modifiers that may add or remove dependencies, thus making the happening of an event contextual. Still the focus is always on the dependencies of the event. In this paper we promote the idea that the context determined by the modifiers plays a major role, and the context itself determines not only the causes but also what causality should be. Modifiers are then used to understand when an event (or a set of events) can be added to a configuration, together with a set of events modeling dependencies, which will play a less important role. We show that most of the notions of Event Structure presented in literature can be translated into this new kind of event structure, preserving the main notion, namely the one of configuration

Automata for true concurrency properties

We present an automata-theoretic framework for the model checking of true concurrency properties. These are specified in a fixpoint logic, corresponding to history-preserving bisimilarity, capable of describing events in computations and their dependencies. The models of the logic are event structures or any formalism which can be given a causal semantics, like Petri nets. Given a formula and an event structure satisfying suitable regularity conditions we show how to construct a parity tree automaton whose language is non-empty if and only if the event structure satisfies the formula. The automaton, due to the nature of event structure models, is usually infinite. We discuss how it can be quotiented to an equivalent finite automaton, where emptiness can be checked effectively. In order to show the applicability of the approach, we discuss how it instantiates to finite safe Petri nets. As a proof of concept we provide a model checking tool implementing the technique